Júlia López-Pérez, Pilar Cortés, Susana Campoy, Ivan Erill and Montserrat Llagostera, “Deciphering the Causes of IbfA-Mediated Abortive Infection in the P22-like Phage UAB_Phi20.,” Int J Mol Sci, vol. 26, no. 10, pp. 4918, May 2025. DOI: 10.3390/ijms26104918.

Miquel Sánchez-Osuna, Ivan Erill, Oriol Gasch and Oscar Q Pich, “Computational protocol for analyzing whole-genome sequencing data from Staphylococcus aureus clinical isolates.,” STAR Protoc, vol. 6, no. 1, pp. 103613, Mar 2025. DOI: 10.1016/j.xpro.2025.103613.

Michael A Trebino, Giordan Kitts, James R J Haycocks, Rachel Wheat, Issac Chaudry, Jin Hwan Park, Ivan Erill, David C Grainger and Fitnat H Yildiz, “Parallel regulatory circuits orchestrate biofilm formation in response to c-di-GMP levels and growth phase.,” PLoS Genet, vol. 21, no. 9, pp. e1011870, Sep 2025. DOI: 10.1371/journal.pgen.1011870.

Soven Verma Kumar, Nicholas Schaffer, Zainab Bharmal, Quinn Mood, Ivan Erill and Steven M Caruso, “Complete genome and characteristics of cluster BC bacteriophage SoJo, isolated using Streptomyces mirabilis NRRL B-2400 in Columbia, MD.,” Microbiol Resour Announc, vol. 13, no. 4, pp. e0006824, Apr 2024. DOI: 10.1128/mra.00068-24.

Miquel Sánchez-Osuna, Marc Pedrosa, Paula Bierge, Inmaculada Gómez-Sánchez, Marina Alguacil-Guillén, Mateu Espasa, Ivan Erill, Oriol Gasch and Oscar Q Pich, “Genomic analysis of Staphylococcus aureus isolates from bacteremia reveals genetic features associated with the COVID-19 pandemic.,” iScience, vol. 27, no. 8, pp. 110402, Aug 2024. DOI: 10.1016/j.isci.2024.110402.

Tagide deCarvalho, Elia Mascolo, Steven M Caruso, Júlia López-Pérez, Kathleen Weston-Hafer, Christopher Shaffer and Ivan Erill, “Simultaneous entry as an adaptation to virulence in a novel satellite-helper system infecting Streptomyces species.,” ISME J, vol. 17, no. 12, pp. 2381-2388, Dec 2023. DOI: 10.1038/s41396-023-01548-0.

Pratima Gautam, Ivan Erill and Kathleen D Cusick, “Linking Copper-Associated Signal Transduction Systems with Their Environment in Marine Bacteria.,” Microorganisms, vol. 11, no. 4, pp. 1012, Apr 2023. DOI: 10.3390/microorganisms11041012.

Ahmed Ismail, Tanuj Saini, Ahmed Al Qaffas, Ivan Erill, Steven M Caruso, Louise Temple and Allison A Johnson, “Evidence of a Set of Core-Function Genes in 16 Bacillus Podoviral Genomes with Considerable Genomic Diversity.,” Viruses, vol. 15, no. 2, pp. 276, Jan 2023. DOI: 10.3390/v15020276.

Giordan Kitts, Andrew Rogers, Jennifer K Teschler, Jin Hwan Park, Michael A Trebino, Issac Chaudry, Ivan Erill and Fitnat H Yildiz, “The Rvv two-component regulatory system regulates biofilm formation and colonization in Vibrio cholerae.,” PLoS Pathog, vol. 19, no. 5, pp. e1011415, May 2023. DOI: 10.1371/journal.ppat.1011415.

Júlia López-Pérez, Jennifer Otero, Miquel Sánchez-Osuna, Ivan Erill, Pilar Cortés and Montserrat Llagostera, “Impact of mutagenesis and lateral gene transfer processes in bacterial susceptibility to phage in food biocontrol and phage therapy.,” Front Cell Infect Microbiol, vol. 13, pp. 1266685, 2023. DOI: 10.3389/fcimb.2023.1266685.

Miquel Sánchez-Osuna, Jordi Barbé and Ivan Erill, “Systematic In Silico Assessment of Antimicrobial Resistance Dissemination across the Global Plasmidome.,” Antibiotics (Basel), vol. 12, no. 2, pp. 281, Feb 2023. DOI: 10.3390/antibiotics12020281.

Faith Davis, Baily Kakacek, Delaram Doorandish, Tamar Goldwasser, Neyiasuo Agboha, Steven M Caruso and Ivan Erill, “Genome Sequences of Streptomyces Bacteriophages Fabian, FlowerPower, Geostin, RetrieverFever, and Vorvolakos.,” Microbiol Resour Announc, vol. 11, no. 12, pp. e0099822, Dec 2022. DOI: 10.1128/mra.00998-22.

Pengfei Ding, Zhenhua Ming, Juntao Liu, Ivan Erill and Zheng Zhang, “Editorial: Microbiome and microbial informatics.,” Front Microbiol, vol. 13, pp. 1054811, 2022. DOI: 10.3389/fmicb.2022.1054811.

Elia Mascolo, Satish Adhikari, Steven M Caruso, Tagide deCarvalho, Anna Folch Salvador, Joan Serra-Sagristà, Ry Young, Ivan Erill and Patrick D Curtis, “The transcriptional regulator CtrA controls gene expression in Alphaproteobacteria phages: Evidence for a lytic deferment pathway.,” Front Microbiol, vol. 13, pp. 918015, 2022. DOI: 10.3389/fmicb.2022.918015.

Suvarna Nadendla, Rebecca Jackson, James Munro, Federica Quaglia, Bálint Mészáros, Dustin Olley, Elizabeth T Hobbs, Stephen M Goralski, Marcus Chibucos, Christopher John Mungall, Silvio C E Tosatto, Ivan Erill and Michelle G Giglio, “ECO: the Evidence and Conclusion Ontology, an update for 2022.,” Nucleic Acids Res, vol. 50, no. D1, pp. D1515-D1521, Jan 2022. DOI: 10.1093/nar/gkab1025.

Yvette Genie Park, Gillian Faith McCarthy, Hadeeqa Mustafa, Gemma M Feild, Snigdha Puram, Hager Aly Younes, Danyah Imam, Ivan Erill and Steven M Caruso, “Complete Genome Sequences of Streptomyces Bacteriophages Annihilus, TonyStarch, Thiqqums, CricKo, ClubPenguin, RosaAsantewaa, and PherryCruz.,” Microbiol Resour Announc, vol. 11, no. 11, pp. e0092222, Nov 2022. DOI: 10.1128/mra.00922-22.

Satish Adhikari, Ivan Erill and Patrick D Curtis, “Transcriptional rewiring of the GcrA/CcrM bacterial epigenetic regulatory system in closely related bacteria.,” PLoS Genet, vol. 17, no. 3, pp. e1009433, Mar 2021. DOI: 10.1371/journal.pgen.1009433.

Kathleen Cusick, Ane Iturbide, Pratima Gautam, Amelia Price, Shawn Polson, Madolyn MacDonald and Ivan Erill, “Enhanced copper-resistance gene repertoire in Alteromonas macleodii strains isolated from copper-treated marine coatings.,” PLoS One, vol. 16, no. 9, pp. e0257800, 2021. DOI: 10.1371/journal.pone.0257800.

Elizabeth T Hobbs, Stephen M Goralski, Ashley Mitchell, Andrew Simpson, Dorjan Leka, Emmanuel Kotey, Matt Sekira, James B Munro, Suvarna Nadendla, Rebecca Jackson, Aitor Gonzalez-Aguirre, Martin Krallinger, Michelle Giglio and Ivan Erill, “ECO-CollecTF: A Corpus of Annotated Evidence-Based Assertions in Biomedical Manuscripts.,” Front Res Metr Anal, vol. 6, pp. 674205, 2021. DOI: 10.3389/frma.2021.674205.

Jolene Ramsey, Brenley McIntosh, Daniel Renfro, Suzanne A Aleksander, Sandra LaBonte, Curtis Ross, Adrienne E Zweifel, Nathan Liles, Shabnam Farrar, Jason J Gill, Ivan Erill, Sarah Ades, Tanya Z Berardini, Jennifer A Bennett, Siobhan Brady, Robert Britton, Seth Carbon, Steven M Caruso, Dave Clements, Ritu Dalia, Meredith Defelice, Erin L Doyle, Iddo Friedberg, Susan M R Gurney, Lee Hughes, Allison Johnson, Jason M Kowalski, Donghui Li, Ruth C Lovering, Tamara L Mans, Fiona McCarthy, Sean D Moore, Rebecca Murphy, Timothy D Paustian, Sarah Perdue, Celeste N Peterson, Birgit M Prüß, Margaret S Saha, Robert R Sheehy, John T Tansey, Louise Temple, Alexander William Thorman, Saul Trevino, Amy Cheng Vollmer, Virginia Walbot, Joanne Willey, Deborah A Siegele and James C Hu, “Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO).,” PLoS Comput Biol, vol. 17, no. 10, pp. e1009463, Oct 2021. DOI: 10.1371/journal.pcbi.1009463.

Miquel Sánchez-Osuna, Pilar Cortés, Mark Lee, Aaron T Smith, Jordi Barbé and Ivan Erill, “Non-canonical LexA proteins regulate the SOS response in the Bacteroidetes.,” Nucleic Acids Res, vol. 49, no. 19, pp. 11050-11066, Nov 2021. DOI: 10.1093/nar/gkab773.

Stephen F Baron, Ashley N Crossman, Shikha Malik, Parveen Sidhu, Kiran Nehra, Pragati Jamdagni, Ivan Erill and Louise M Temple, “Complete Genome Sequence of the Streptomyces-Specific Bacteriophage BRock.,” Microbiol Resour Announc, vol. 9, no. 35, pp. e00624-20, Aug 2020. DOI: 10.1128/MRA.00624-20.

Qingyu Chen, Ramona Britto, Ivan Erill, Constance J Jeffery, Arthur Liberzon, Michele Magrane, Jun-Ichi Onami, Marc Robinson-Rechavi, Jana Sponarova, Justin Zobel and Karin Verspoor, “Quality Matters: Biocuration Experts on the Impact of Duplication and Other Data Quality Issues in Biological Databases.,” Genomics Proteomics Bioinformatics, vol. 18, no. 2, pp. 91-103, Apr 2020. DOI: 10.1016/j.gpb.2018.11.006.

Tamar L Goulet, Ivan Erill, Marina S Ascunce, Sheree J Finley and Gulnaz T Javan, “Conceptualization of the Holobiont Paradigm as It Pertains to Corals.,” Front Physiol, vol. 11, pp. 566968, 2020. DOI: 10.3389/fphys.2020.566968.

Sefa Kılıç, Miquel Sánchez-Osuna, Antonio Collado-Padilla, Jordi Barbé and Ivan Erill, “Flexible comparative genomics of prokaryotic transcriptional regulatory networks.,” BMC Genomics, vol. 21, no. Suppl 5, pp. 466, Dec 2020. DOI: 10.1186/s12864-020-06838-x.

Miquel Sánchez-Osuna, Pilar Cortés, Montserrat Llagostera, Jordi Barbé and Ivan Erill, “Exploration into the origins and mobilization of di-hydrofolate reductase genes and the emergence of clinical resistance to trimethoprim.,” Microb Genom, vol. 6, no. 11, pp. mgen000440, Nov 2020. DOI: 10.1099/mgen.0.000440.

Steven M Caruso, Tagide N deCarvalho, Anthony Huynh, George Morcos, Nansen Kuo, Shabnam Parsa and Ivan Erill, “A Novel Genus of Actinobacterial Tectiviridae.,” Viruses, vol. 11, no. 12, pp. 1134, Dec 2019. DOI: 10.3390/v11121134.

Michelle Giglio, Rebecca Tauber, Suvarna Nadendla, James Munro, Dustin Olley, Shoshannah Ball, Elvira Mitraka, Lynn M Schriml, Pascale Gaudet, Elizabeth T Hobbs, Ivan Erill, Deborah A Siegele, James C Hu, Chris Mungall and Marcus C Chibucos, “ECO, the Evidence & Conclusion Ontology: community standard for evidence information.,” Nucleic Acids Res, vol. 47, no. D1, pp. D1186-D1194, Jan 2019. DOI: 10.1093/nar/gky1036.

Devin Blocker, Matthew Koert, Courtney Mattson, Harsh Patel, Priya Patel, Rishit Patel, Hemanta Paudel, Ivan Erill and Steven M Caruso, “Complete Genome Sequences of Six BI Cluster Streptomyces Bacteriophages, HotFries, Moozy, Rainydai, RavenPuff, Scap1, and SenditCS.,” Microbiol Resour Announc, vol. 7, no. 12, pp. e00993-18, Sep 2018. DOI: 10.1128/MRA.00993-18.

Ivan Erill and Steven M Caruso, “Complete Genome Sequence of Streptomyces Bacteriophage Abt2graduatex2.,” Genome Announc, vol. 6, no. 3, pp. e01480-17, Jan 2018. DOI: 10.1128/genomeA.01480-17.

Martin Lee, Kayla M Puglisi, Ivan Erill and Steven M Caruso, “Complete Genome Sequences of HonestAbe, Anthony, and Taffo16, Three Cluster C Bacillus cereus Group Bacteriophages.,” Genome Announc, vol. 6, no. 25, pp. e00493-18, Jun 2018. DOI: 10.1128/genomeA.00493-18.

Miquel Sánchez-Osuna, Pilar Cortés, Jordi Barbé and Ivan Erill, “Origin of the Mobile Di-Hydro-Pteroate Synthase Gene Determining Sulfonamide Resistance in Clinical Isolates.,” Front Microbiol, vol. 9, pp. 3332, 2018. DOI: 10.3389/fmicb.2018.03332.

International Society for Biocuration, “Biocuration: Distilling data into knowledge.,” PLoS Biol, vol. 16, no. 4, pp. e2002846, Apr 2018. DOI: 10.1371/journal.pbio.2002846.

Ivan Erill, Marina Puigvert, Ludovic Legrand, Rodrigo Guarischi-Sousa, Céline Vandecasteele, João C Setubal, Stephane Genin, Alice Guidot and Marc Valls, “Comparative Analysis of Ralstonia solanacearum Methylomes.,” Front Plant Sci, vol. 8, pp. 504, 2017. DOI: 10.3389/fpls.2017.00504.

Ivan Erill and Steven M Caruso, “Complete Genome Sequences of Three phi29-Like Bacillus cereus Group Podoviridae.,” Genome Announc, vol. 5, no. 29, pp. e00701-17, Jul 2017. DOI: 10.1128/genomeA.00701-17.

Ivan Erill and Steven M Caruso, “Bacillus cereus Group Bacteriophage Flapjack Genome Sequence.,” Genome Announc, vol. 5, no. 31, pp. e00700-17, Aug 2017. DOI: 10.1128/genomeA.00700-17.

David I Hanauer, Mark J Graham, Laura Betancur, Aiyana Bobrownicki, Steven G Cresawn, Rebecca A Garlena, Deborah Jacobs-Sera, Nancy Kaufmann, Welkin H Pope, Daniel A Russell, William R Jr Jacobs, Viknesh Sivanathan, David J Asai and Graham F Hatfull, “An inclusive Research Education Community (iREC): Impact of the SEA-PHAGES program on research outcomes and student learning.,” Proc Natl Acad Sci U S A, vol. 114, no. 51, pp. 13531-13536, Dec 2017. DOI: 10.1073/pnas.1718188115.

Miquel Sánchez-Osuna, Jordi Barbé and Ivan Erill, “Comparative genomics of the DNA damage-inducible network in the Patescibacteria.,” Environ Microbiol, vol. 19, no. 9, pp. 3465-3474, Sep 2017. DOI: 10.1111/1462-2920.13826.

Ivan Erill, Susana Campoy, Sefa Kılıç and Jordi Barbé, “The Verrucomicrobia LexA-Binding Motif: Insights into the Evolutionary Dynamics of the SOS Response.,” Front Mol Biosci, vol. 3, pp. 33, 2016. DOI: 10.3389/fmolb.2016.00033.

Ivan Erill and Steven M Caruso, “Genome Sequence of Bacillus cereus Group Phage SalinJah.,” Genome Announc, vol. 4, no. 5, pp. e00953-16, Sep 2016. DOI: 10.1128/genomeA.00953-16.

Ivan Erill and Steven M Caruso, “Complete Genome Sequence of the Streptomyces Phage Nanodon.,” Genome Announc, vol. 4, no. 5, pp. e01019-16, Oct 2016. DOI: 10.1128/genomeA.01019-16.

Elizabeth T Hobbs, Talmo Pereira, Patrick K O'Neill and Ivan Erill, “A Bayesian inference method for the analysis of transcriptional regulatory networks in metagenomic data.,” Algorithms Mol Biol, vol. 11, pp. 19, 2016. DOI: 10.1186/s13015-016-0082-8.

Sefa Kılıç, Dinara M Sagitova, Shoshannah Wolfish, Benoit Bely, Mélanie Courtot, Stacy Ciufo, Tatiana Tatusova, Claire O'Donovan, Marcus C Chibucos, Maria J Martin and Ivan Erill, “From data repositories to submission portals: rethinking the role of domain-specific databases in CollecTF.,” Database (Oxford), vol. 2016, pp. baw055 [pii], 2016. DOI: 10.1093/database/baw055.

Sefa Kılıç and Ivan Erill, “Assessment of transfer methods for comparative genomics of regulatory networks in bacteria.,” BMC Bioinformatics, vol. 17 Suppl 8, no. Suppl 8, pp. 277, Aug 2016. DOI: 10.1186/s12859-016-1113-7.

Patrick K O'Neill and Ivan Erill, “Parametric bootstrapping for biological sequence motifs.,” BMC Bioinformatics, vol. 17, no. 1, pp. 406, Oct 2016. DOI: 10.1186/s12859-016-1246-8.

Amber Brooke Sauder, McKenzie Rea Quinn, Alexis Brouillette, Steven Caruso, Steven Cresawn, Ivan Erill, Lynn Lewis, Kathryn Loesser-Casey, Morgan Pate, Crystal Scott, Stephanie Stockwell and Louise Temple, “Genomic characterization and comparison of seven Myoviridae bacteriophage infecting Bacillus thuringiensis.,” Virology, vol. 489, pp. 243-51, Feb 2016. DOI: 10.1016/j.virol.2015.12.012.

Ivan Erill, “Every Site Counts: Submitting Transcription Factor-Binding Site Information through the CollecTF Portal.,” J Bacteriol, vol. 197, no. 15, pp. 2454-7, Aug 2015. DOI: 10.1128/JB.00031-15.

Ivan Erill and Steven M Caruso, “Complete Genome Sequence of Bacillus cereus Group Phage TsarBomba.,” Genome Announc, vol. 3, no. 5, pp. e01178-15, Oct 2015. DOI: 10.1128/genomeA.01178-15.

Ivan Erill and Steven M Caruso, “Genome Sequences of Two Bacillus cereus Group Bacteriophages, Eyuki and AvesoBmore.,” Genome Announc, vol. 3, no. 5, pp. e01199-15, Oct 2015. DOI: 10.1128/genomeA.01199-15.

Ivan Erill and Steven M Caruso, “Erratum for Erill and Caruso, Complete Genome Sequence of Bacillus cereus Group Phage TsarBomba.,” Genome Announc, vol. 3, no. 6, pp. e01458-15, Nov 2015. DOI: 10.1128/genomeA.01458-15.

Ian S Hagemann, Patrick K O'Neill, Ivan Erill and John D Pfeifer, “Diagnostic yield of targeted next generation sequencing in various cancer types: an information-theoretic approach.,” Cancer Genet, vol. 208, no. 9, pp. 441-7, Sep 2015. DOI: 10.1016/j.cancergen.2015.05.030.

Neus Sanchez-Alberola, Susana Campoy, David Emerson, Jordi Barbé and Ivan Erill, “An SOS Regulon under Control of a Noncanonical LexA-Binding Motif in the Betaproteobacteria.,” J Bacteriol, vol. 197, no. 16, pp. 2622-30, Aug 2015. DOI: 10.1128/JB.00035-15.

David Zamorano-Sánchez, Jiunn C N Fong, Sefa Kilic, Ivan Erill and Fitnat H Yildiz, “Identification and characterization of VpsR and VpsT binding sites in Vibrio cholerae.,” J Bacteriol, vol. 197, no. 7, pp. 1221-35, Apr 2015. DOI: 10.1128/JB.02439-14.

Joseph P Cornish, Neus Sanchez-Alberola, Patrick K O'Neill, Ronald O'Keefe, Jameel Gheba and Ivan Erill, “Characterization of the SOS meta-regulon in the human gut microbiome.,” Bioinformatics, vol. 30, no. 9, pp. 1193-7, May 2014. DOI: 10.1093/bioinformatics/btt753.

Sefa Kiliç, Elliot R White, Dinara M Sagitova, Joseph P Cornish and Ivan Erill, “CollecTF: a database of experimentally validated transcription factor-binding sites in Bacteria.,” Nucleic Acids Res, vol. 42, no. Database issue, pp. D156-60, Jan 2014. DOI: 10.1093/nar/gkt1123.

Patrick K O'Neill, Robert Forder and Ivan Erill, “Informational requirements for transcriptional regulation.,” J Comput Biol, vol. 21, no. 5, pp. 373-84, May 2014. DOI: 10.1089/cmb.2014.0032.

Anne M Stringer, Salvatore Currenti, Richard P Bonocora, Catherine Baranowski, Brianna L Petrone, Michael J Palumbo, Andrew A Reilly, Zhen Zhang, Ivan Erill and Joseph T Wade, “Genome-scale analyses of Escherichia coli and Salmonella enterica AraC reveal noncanonical targets and an expanded core regulon.,” J Bacteriol, vol. 196, no. 3, pp. 660-71, Feb 2014. DOI: 10.1128/JB.01007-13.

Patrick K O'Neill, Mindy Or and Ivan Erill, “scnRCA: a novel method to detect consistent patterns of translational selection in mutationally-biased genomes.,” PLoS One, vol. 8, no. 10, pp. e76177, 2013. DOI: 10.1371/journal.pone.0076177.

Laura J Anzaldi, Daniel Muñoz-Fernández and Ivan Erill, “BioWord: a sequence manipulation suite for Microsoft Word.,” BMC Bioinformatics, vol. 13, pp. 124, Jun 2012. DOI: 10.1186/1471-2105-13-124.

Joseph P Cornish, Fialelei Matthews, Julien R Thomas and Ivan Erill, “Inference of self-regulated transcriptional networks by comparative genomics.,” Evol Bioinform Online, vol. 8, pp. 449-61, 2012. DOI: 10.4137/EBO.S9205.

Neus Sanchez-Alberola, Susana Campoy, Jordi Barbé and Ivan Erill, “Analysis of the SOS response of Vibrio and other bacteria with multiple chromosomes.,” BMC Genomics, vol. 13, pp. 58, Feb 2012. DOI: 10.1186/1471-2164-13-58.

Guillaume Cambray, Neus Sanchez-Alberola, Susana Campoy, Émilie Guerin, Sandra Da Re, Bruno González-Zorn, Marie-Cécile Ploy, Jordi Barbé, Didier Mazel and Ivan Erill, “Prevalence of SOS-mediated control of integron integrase expression as an adaptive trait of chromosomal and mobile integrons.,” Mob DNA, vol. 2, no. 1, pp. 6, Apr 2011. DOI: 10.1186/1759-8753-2-6.

Nidhi Bhargava and Ivan Erill, “xFITOM: a generic GUI tool to search for transcription factor binding sites.,” Bioinformation, vol. 5, no. 2, pp. 49-51, Jul 2010. DOI: 10.6026/97320630005049.

Jesse M Fox and Ivan Erill, “Relative codon adaptation: a generic codon bias index for prediction of gene expression.,” DNA Res, vol. 17, no. 3, pp. 185-96, Jun 2010. DOI: 10.1093/dnares/dsq012.

Ivan Erill and Michael C O'Neill, “A reexamination of information theory-based methods for DNA-binding site identification.,” BMC Bioinformatics, vol. 10, pp. 57, Feb 2009. DOI: 10.1186/1471-2105-10-57.

Emilie Guerin, Guillaume Cambray, Neus Sanchez-Alberola, Susana Campoy, Ivan Erill, Sandra Da Re, Bruno Gonzalez-Zorn, Jordi Barbé, Marie-Cécile Ploy and Didier Mazel, “The SOS response controls integron recombination.,” Science, vol. 324, no. 5930, pp. 1034, May 2009. DOI: 10.1126/science.1172914.

Amelia J Hessheimer, Damià Parramón, Anton Guimerà, Ivan Erill, Antoni Rimola, Juan C García-Valdecasas, Rosa Villa and Constantino Fondevila, “A rapid and reliable means of assessing hepatic steatosis in vivo via electrical bioimpedance.,” Transplantation, vol. 88, no. 5, pp. 716-22, Sep 2009. DOI: 10.1097/TP.0b013e3181b391c0.

Marc Abella, Susana Campoy, Ivan Erill, Fernando Rojo and Jordi Barbé, “Cohabitation of two different lexA regulons in Pseudomonas putida.,” J Bacteriol, vol. 189, no. 24, pp. 8855-62, Dec 2007. DOI: 10.1128/JB.01213-07.

Ivan Erill, Susana Campoy and Jordi Barbé, “Aeons of distress: an evolutionary perspective on the bacterial SOS response.,” FEMS Microbiol Rev, vol. 31, no. 6, pp. 637-56, Nov 2007. DOI: 10.1111/j.1574-6976.2007.00082.x.

Damià Parramon, Ivan Erill, Anton Guimerà, Antoni Ivorra, Angeles Muñoz, Anna Sola, Constantino Fondevila, Juan Carlos García-Valdecasas and Rosa Villa, “In vivo detection of liver steatosis in rats based on impedance spectroscopy.,” Physiol Meas, vol. 28, no. 8, pp. 813-28, Aug 2007. DOI: 10.1088/0967-3334/28/8/005.

Susana Campoy, Anna Hervàs, Núria Busquets, Ivan Erill, Laura Teixidó and Jordi Barbé, “Induction of the SOS response by bacteriophage lytic development in Salmonella enterica.,” Virology, vol. 351, no. 2, pp. 360-7, Aug 2006. DOI: 10.1016/j.virol.2006.04.001.

Ivan Erill, Susana Campoy, Gerard Mazon and Jordi Barbé, “Dispersal and regulation of an adaptive mutagenesis cassette in the bacteria domain.,” Nucleic Acids Res, vol. 34, no. 1, pp. 66-77, 2006. DOI: 10.1093/nar/gkj412.

Rodrigo Gómez, Antoni Ivorra, Rosa Villa, Philippe Godignon, José Millán, Ivan Erill, Anna Solà, Georgina Hotter and Luís Palacios, “A SiC microdevice for the minimally invasive monitoring of ischemia in living tissues.,” Biomed Microdevices, vol. 8, no. 1, pp. 43-9, Mar 2006. DOI: 10.1007/s10544-006-6381-y.

Gerard Mazón, Susana Campoy, Ivan Erill and Jordi Barbé, “Identification of the Acidobacterium capsulatum LexA box reveals a lateral acquisition of the Alphaproteobacteria lexA gene.,” Microbiology (Reading), vol. 152, no. Pt 4, pp. 1109-1118, Apr 2006. DOI: 10.1099/mic.0.28376-0.

Rosa Villa, Constantino Fondevila, Ivan Erill, Anton Guimerà, Ernest Bombuy, Cristina Gómez-Suárez, Juan Carlos Sacristán and Juan Carlos García-Valdecasas, “Real-time direct measurement of human liver allograft temperature from recovery to transplantation.,” Transplantation, vol. 81, no. 3, pp. 483-6, Feb 2006. DOI: 10.1097/01.tp.0000195903.12999.bc.

Susana Campoy, Noelia Salvador, Pilar Cortés, Ivan Erill and Jordi Barbé, “Expression of canonical SOS genes is not under LexA repression in Bdellovibrio bacteriovorus.,” J Bacteriol, vol. 187, no. 15, pp. 5367-75, Aug 2005. DOI: 10.1128/JB.187.15.5367-5375.2005.

Marc Abella, Ivan Erill, Mónica Jara, Gerard Mazón, Susana Campoy and Jordi Barbé, “Widespread distribution of a lexA-regulated DNA damage-inducible multiple gene cassette in the Proteobacteria phylum.,” Mol Microbiol, vol. 54, no. 1, pp. 212-22, Oct 2004. DOI: 10.1111/j.1365-2958.2004.04260.x.

Ivan Erill, Mónica Jara, Noelia Salvador, Marcos Escribano, Susana Campoy and Jordi Barbé, “Differences in LexA regulon structure among Proteobacteria through in vivo assisted comparative genomics.,” Nucleic Acids Res, vol. 32, no. 22, pp. 6617-26, 2004. DOI: 10.1093/nar/gkh996.

Gerard Mazón, Ivan Erill, Susana Campoy, Pilar Cortés, Evelyne Forano and Jordi Barbé, “Reconstruction of the evolutionary history of the LexA-binding sequence.,” Microbiology (Reading), vol. 150, no. Pt 11, pp. 3783-3795, Nov 2004. DOI: 10.1099/mic.0.27315-0.

Ivan Erill, Marcos Escribano, Susana Campoy and Jordi Barbé, “In silico analysis reveals substantial variability in the gene contents of the gamma proteobacteria LexA-regulon.,” Bioinformatics, vol. 19, no. 17, pp. 2225-36, Nov 2003. DOI: 10.1093/bioinformatics/btg303.

Antonio R Fernández de Henestrosa, Jordi Cuñé, Ivan Erill, Jon K Magnuson and Jordi Barbé, “A green nonsulfur bacterium, Dehalococcoides ethenogenes, with the LexA binding sequence found in gram-positive organisms.,” J Bacteriol, vol. 184, no. 21, pp. 6073-80, Nov 2002. DOI: 10.1128/JB.184.21.6073-6080.2002.